PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do018993.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17276.2 Da    PI: 11.8381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do018993.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.51.7e-134879233
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCda 33
                 ien++nrqv f kR   ilKKA E+SvL da
  Do018993.1 48 WIENSTNRQVXFXKRXXAILKKAREISVLRDA 79
                69***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.7873979IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-123997IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-144082IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-134161IPR002100Transcription factor, MADS-box
PfamPF003196.4E-94979IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-136176IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
LGPGPRPSSR RPRPPVQPCS PARCDGRWCF PPLARGPQTR RGKIEIKWIE NSTNRQVXFX  60
KRXXAILKKA REISVLRDAX GVTASSSSPA PASSTTSAPQ RHYYRAFTSR ARAYSSFHEP  120
SSSLTTSSNV KSGSFELGSN FYRAQAEPAC IRSSSAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo018993.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929597e-61AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBankBT0648497e-61BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5WMX61e-103A0A1E5WMX6_9POAL; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.24e-11MIKC_MADS family protein