PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019009.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ZF-HD
Protein Properties Length: 428aa    MW: 46140.8 Da    PI: 7.5151
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019009.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer89.92.5e-28168220357
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                  ++rY+eCl+NhAa+lG+h++DGC+Efmps g+   aaal CaACgCHR+FHRre 
   Do019009.1 168 QWRYRECLRNHAARLGAHVLDGCCEFMPSAGDG--AAALACAACGCHRSFHRREA 220
                  789**************************6666..99****************97 PP
2Homeobox15.43.2e-05319374152
                 TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                 +r Rt+ft++q +++ e+ +    + ++p+ ++     +++g++ r+ kvW +N +
  Do019009.1 319 KRFRTKFTADQKDRMREFAHrlgwRIHKPDSDAVDAFCAQVGVSRRVLKVWMHNNK 374
                 789***********987655888779****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-25169220IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-8170219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-23170219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.765171219IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-29309377IPR009057Homeodomain-like
SuperFamilySSF466896.8E-19310375IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26318374IPR006455Homeodomain, ZF-HD class
CDDcd000860.00814319372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEYKRPSHVE EEEEEEEEEE DEEEEEEEED EARVHRYTTA AAAPVGAPPP QQVHAQALGL  60
GSHSVLMNDA AAFSRPLLPP NSSLVMQPPL PPPGFMPPLR QPQLHPRRAE RERERAAGPG  120
VQQPHQPRRH QEAARNGVLR SGNVAPPAST RVPATGAGAA VGAVEAAQWR YRECLRNHAA  180
RLGAHVLDGC CEFMPSAGDG AAALACAACG CHRSFHRREA VPGGVAAAVA VSPSPTIPAA  240
GANANSSRVM PLLLAPPHMQ TRPHVPVSPS SAPAALTESS SEELRGPAPA RPVPPTTLPP  300
HAQLHVGGSA SAPPAPSKKR FRTKFTADQK DRMREFAHRL GWRIHKPDSD AVDAFCAQVG  360
VSRRVLKVWM HNNKHLAKIP PSPPSSQPPA PPPPHHHDHH PPPPPHHILH HHHPPPPQQP  420
QPQQQHDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-223173861679ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9707630.0EU970763.1 Zea mays clone 350303 zinc finger homeodomain protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953622.11e-146zinc-finger homeodomain protein 7
SwissprotQ8S3Q91e-80ZHD7_ORYSJ; Zinc-finger homeodomain protein 7
TrEMBLA0A1E5W0S90.0A0A1E5W0S9_9POAL; Zinc-finger homeodomain protein 7
STRINGSi020227m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134912329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.16e-27homeobox protein 28