PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019082.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11098.7 Da    PI: 11.562
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019082.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.38.5e-182968140
                S---SHHHHHHHHHHHHHHHHH.HHHHHHHHHT-EEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilK.KAeELSvLCdaevaviif 40
                krien s+rqvtfskRrng+lK KA E+SvLCd+ev v   
  Do019082.1 29 KRIEN-SKRQVTFSKRRNGVLKkKAREISVLCDTEVGVTAS 68
                68888.579************637************98655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.7082170IPR002100Transcription factor, MADS-box
SMARTSM004327.5E-172180IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-162281IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-72343IPR002100Transcription factor, MADS-box
PfamPF003194.4E-143268IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-74358IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-75879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
LLGATADGAS PWPPLARGPP TRRSKIEIKR IENSKRQVTF SKRRNGVLKK KAREISVLCD  60
TEVGVTASSS FLAPATSMTS SPSSFHEPSS SLFELWLSRA RA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019082.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2929593e-37AJ292959.1 Zea mays mRNA for putative MADS-domain transcription factor (m16 gene).
GenBankBT0648493e-37BT064849.1 Zea mays full-length cDNA clone ZM_BFb0210M20 mRNA, complete cds.
GenBankEU9602103e-37EU960210.1 Zea mays clone 222572 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970811.14e-17MADS-box transcription factor 2
RefseqXP_025816957.14e-17MADS-box transcription factor 2
SwissprotQ407021e-16MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLA0A1E5UL575e-66A0A1E5UL57_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Ea03625.1.p1e-16(Panicum virgatum)
STRINGPavir.J19259.1.p1e-16(Panicum virgatum)
STRINGSi002929m1e-16(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.26e-15AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]