PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019090.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Protein Properties

Length: 178aa MW: 19596.2 Da PI: 4.8999

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019090.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33.8	5.9e-11	54	134	1	87
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ff++ +++ ++ +lv+p + ++ +++ + +l grsW ++ + k ++ + + W++F+ +ngL++gD +vF+l++ Do019090.1 54 FFTTVMSKTQVQKFQLVIPTRLHRHLP--EAR-VPAVL-LCGGRSWAASYCGDLKCKK--IDAXWRDFALDNGLRVGDACVFELIRP 134 788888888999999***9985443..222.23333.347****66655555..8999*****************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.1E-17	48	156	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-14	50	135	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.34E-14	53	156	No hit	No description
PROSITE profile	PS50863	10.983	54	158	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-9	54	135	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0085	54	158	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
METPGFPRKQ QQLPDLSIIK PKVEPCEEEE HSPPLPPLAS DDWEVTPLSG EHPFFTTVMS 60 KTQVQKFQLV IPTRLHRHLP EARVPAVLLC GGRSWAASYC GDLKCKKIDA XWRDFALDNG 120 LRVGDACVFE LIRPTDGAGT ECAGSGKVEF RVQVLRGGLP EEITSMGATS DEPLVIVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811196.1	6e-88	B3 domain-containing protein Os06g0112300-like isoform X1
Swissprot	Q9LHY9	5e-46	Y6112_ORYSJ; B3 domain-containing protein Os06g0112300
TrEMBL	A0A1E5W7Y6	1e-126	A0A1E5W7Y6_9POAL; B3 domain-containing protein
STRING	Pavir.Db02470.1.p	4e-80	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12046	19	33

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]