PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019125.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 258aa    MW: 28456.6 Da    PI: 10.7387
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019125.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-172772147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
       Do019125.1 27 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLE-GRSGKSCRLRWFNQ 72
                     899*****************************.***********996 PP
2Myb_DNA-binding56.18.4e-1879123147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ +
       Do019125.1  79 RRPFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 123
                      679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9222273IPR017930Myb domain
SuperFamilySSF466892.96E-2926120IPR009057Homeodomain-like
SMARTSM007172.0E-142675IPR001005SANT/Myb domain
PfamPF002491.1E-162772IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-262880IPR009057Homeodomain-like
CDDcd001673.72E-143071No hitNo description
PROSITE profilePS5129425.69274128IPR017930Myb domain
SMARTSM007172.2E-1578126IPR001005SANT/Myb domain
PfamPF002498.1E-1579122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2081126IPR009057Homeodomain-like
CDDcd001673.77E-1281124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRDMVPSSST TTTSGRANSR SSSSCSRGHW RPGEDEKLRQ LVEQYGPQNW NSIAEKLEGR  60
SGKSCRLRWF NQLDPRINRR PFTAAEEERL LQAHRAHGNR WALISRLFPG RTDNAVKNHW  120
HVVMARRRRM RSHHRSAGTF LAGAGCSPPP RRPPFQCFHF GAPPAATKTT GSLCFAMPSS  180
GPSSLVSSSG TCNVRNHNVP ATIAFSSSRE VAATPNDHRR DMGKDDDNGG NDDDEDGGGA  240
AAKRKDDVLF FDFLGVGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C5e-31312734158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-31312734158MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-31271274104C-Myb DNA-Binding Domain
1msf_C5e-31271274104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019125.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9724981e-119EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978299.11e-137transcription factor MYB52
TrEMBLA0A1E5VMX80.0A0A1E5VMX8_9POAL; Transcription factor MYB44
STRINGSi011791m1e-125(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-55myb domain protein 52