PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019159.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 276aa    MW: 29633.7 Da    PI: 10.1834
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019159.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B394.66.6e-3031128185
                 EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                 f+kv tpsdv+k++rlv+pk++ae++               gg   ++  lt+ed+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v+F++
  Do019159.1  31 FEKVVTPSDVGKLNRLVIPKQHAERYfpaldasaaaaaaaaGGG--KGLVLTFEDRAGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVLFSR 127
                 99***************************999999888877444..5679************************************************5 PP

                 - CS
          B3  85 d 85 
                  
  Do019159.1 128 G 128
                 4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-4026140IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.23E-3128128IPR015300DNA-binding pseudobarrel domain
CDDcd100175.10E-2829127No hitNo description
SMARTSM010196.0E-2331146IPR003340B3 DNA binding domain
PfamPF023626.6E-2831144IPR003340B3 DNA binding domain
PROSITE profilePS5086313.80331146IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEFTPAHGGA EDSERAARGG GAAWVEKEHM FEKVVTPSDV GKLNRLVIPK QHAERYFPAL  60
DASAAAAAAA AGGGKGLVLT FEDRAGKAWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLGAG  120
DTVLFSRGAG QGPARARLFI DFRRRRQDLA FLQPPLLSAQ RYMPLPSVPI CPWQDYGAYG  180
ATAPAPSSRH VLFLRPQVPA AVVLTSVPVS VAASAVEPTR SKRVRLFGVN LDCPPDGEDG  240
GRVIQTASTL LQLPSPSSST SSSTAGKDVC SLDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-52261453113B3 domain-containing transcription factor NGA1
5os9_B2e-52261453113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983810.11e-159putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-103Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A1E5V5B20.0A0A1E5V5B2_9POAL; Putative B3 domain-containing protein
STRINGSi039972m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.12e-47B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]