PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019274.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 67aa    MW: 7508.63 Da    PI: 11.2516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019274.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-112767449
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
         HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49
                 h ++Er+RR++i +++ eL  l+P +     +K +K++iL  Av+
  Do019274.1 27 DHTIAERKRREKISNRLIELSNLIPGL-----TKTDKVTILSDAVR 67
                69************************9.....9**********995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.4782367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-122466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-112766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-92767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.21E-92867No hitNo description
SMARTSM003530.0042967IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
MVRGPPLTRV NSAKSSWHPS SAPYAQDHTI AERKRREKIS NRLIELSNLI PGLTKTDKVT  60
ILSDAVR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136ERKRRE
23237RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684464.13e-19transcription factor bHLH18-like
TrEMBLA0A1E5V4U86e-41A0A1E5V4U8_9POAL; Uncharacterized protein
STRINGSi011709m1e-18(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4926622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.23e-14bHLH family protein