PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019333.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 251aa MW: 27115.9 Da PI: 7.0853

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019333.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	37.8	5.6e-12	1	28	102	129
NAM 102 lkktLvfykgrapkgektdWvmheyrle 129 +kktLvfy grapkg+kt+Wvmhe+rle Do019333.1 1 MKKTLVFYMGRAPKGSKTNWVMHEFRLE 28 8************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02365	2.2E-4	1	27	IPR003441	NAC domain
PROSITE profile	PS51005	21.271	1	54	IPR003441	NAC domain
SuperFamily	SSF101941	4.84E-16	1	54	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MKKTLVFYMG RAPKGSKTNW VMHEFRLEGS SRHNNGSLRF NPKDEWVVCK VHHKNGEAKK 60 PTEQYSAGTP NVSSVVSDDA IEGDEFLVDS MINPMYFSSA ASSLASTTTI NPHNADYPIS 120 STAAGASTAA TSSSVDLPSN SFNDTRSIIN NLHQVALPNY YSAAPRSNGS SYSSSWNMLH 180 HADQNQAMGS SYNLHHQAMV AIRDEAITEF AGGLPSSSVT AGILQQNSLL GVPPQQKLGN 240 YGESYANSSY K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-15	1	60	119	174	NAC domain-containing protein 19
3swm_B	5e-15	1	60	119	174	NAC domain-containing protein 19
3swm_C	5e-15	1	60	119	174	NAC domain-containing protein 19
3swm_D	5e-15	1	60	119	174	NAC domain-containing protein 19
3swp_A	5e-15	1	60	119	174	NAC domain-containing protein 19
3swp_B	5e-15	1	60	119	174	NAC domain-containing protein 19
3swp_C	5e-15	1	60	119	174	NAC domain-containing protein 19
3swp_D	5e-15	1	60	119	174	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019333.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP098505	1e-47	FP098505.1 Phyllostachys edulis cDNA clone: bphyem203e08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977422.1	1e-108	NAC domain-containing protein 77
TrEMBL	A0A1E5V4S6	0.0	A0A1E5V4S6_9POAL; NAC domain-containing protein 77
STRING	Si010417m	1e-107	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5120	30	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56010.1	5e-20	NAC domain containing protein 1