PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019344.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family FAR1
Protein Properties Length: 155aa    MW: 17246.7 Da    PI: 8.6082
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019344.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.63.9e-0882150176
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkw 76 
                 +fY++Y  ++GFsvr++k+++       +  ++ C+k+g+ +  k   e +  ++++  ++Cka +k k +k +g w
  Do019344.1  82 EFYKSYTGNAGFSVRITKTRQ-------IVLKMSCNKQGHWNFYKPG-EVRVGEKMSGGCECKAFVKAKWNKkKGYW 150
                 6***************98665.......47899*******9998888.889999***************99856666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTPATAANDH AALQCPAPLV SPALAVNPTR LAVVTPLQSV SPATMATPDP DKTYTHVNPS  60
LPDTIMPNEE LRFDSSDEAE EEFYKSYTGN AGFSVRITKT RQIVLKMSCN KQGHWNFYKP  120
GEVRVGEKMS GGCECKAFVK AKWNKKKGYW FYERI
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681792.12e-46protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1E5W3D51e-114A0A1E5W3D5_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Da01755.1.p4e-40(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2534722