PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019457.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 246aa    MW: 27460.1 Da    PI: 9.6647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019457.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.9e-12123164351
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                  +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  Do019457.1 123 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 164
                 79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.93998164IPR001471AP2/ERF domain
PfamPF008472.1E-6122165IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-8122167IPR016177DNA-binding domain
SMARTSM003808.8E-5122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-7125169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGQQEGMQLL GMVAVDTVEG GISSMVSLRR RRLLGLCSGK DSLPVDLPKP IENEKPVEVA  60
HSNVKPFSVH PLPSTKTSDV LTKSSNGSDD SKEEKTPYYP GKEIKRRKRH RRKQYVDQEP  120
CIMRGVYFKN MKWQAAIKVD KKQIHLGTVG TQEEAARLYD RAAFMCGREP NFELSDGEKK  180
ELQKYTWEDF LAVTRNTITS KKQRKVGLLR RSKADLFMGQ SDGDTEMANG GGSSNSDNGD  240
AETSAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648790.0BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151501.11e-144uncharacterized protein LOC100285135
TrEMBLA0A1E5W7K40.0A0A1E5W7K4_9POAL; Ethylene-responsive transcription factor-like protein
STRINGPavir.Aa01947.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.24e-46ERF family protein