PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019543.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

C2H2

Protein Properties

Length: 422aa MW: 44852.4 Da PI: 8.852

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019543.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	189	212	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C dC+++F ++L+ H + H Do019543.1 189 FPCADCDEVFVKAESLELHRANrH 212 89*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.141	189	217	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	191	212	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.17E-16	214	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.3E-9	216	420	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MTIGAKKKSS QSSWMAMGFH RSSSSGKDRA AVAAAAAVTE GKNGDTDKSS GSSSKKKRSV 60 SISRSMTCAG SICSTKESSV LTRNRDRGAA RSASSRSLRA PDVDDVVDAV YAAAAISATS 120 SFNSEATAAT SLATTVTSAS SPLSSALSSP MSSSFGSSFR GVQQIRKLSG CYECHSVFDP 180 RSLGGAAAFP CADCDEVFVK AESLELHRAN RHAVSELGPD DTSRNIVEII FQSSWLRKQA 240 PVCKIDRILK VQSSDRTVKR FEQYKESIKE RASSDEGNKK NPRCVADGNE LLRFHCTTFT 300 CSLGAGGGTA LCRAPSAQCK LCSIIRDGFR VDADGKIATM ATSGRAHDTA QVLSVGEKKA 360 MLVCRVVAGR VTKTSDRKSS ERDCDCDSVS PSSEGVYSDL DELFLFNPRA ILPCFVVIYS 420 GY

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MTIGAKKKSS QSSWMAMGFH RSSSSGKDRA AVAAAAAVTE GKNGDTDKSS GSSSKKKRSV  60
SISRSMTCAG SICSTKESSV LTRNRDRGAA RSASSRSLRA PDVDDVVDAV YAAAAISATS  120
SFNSEATAAT SLATTVTSAS SPLSSALSSP MSSSFGSSFR GVQQIRKLSG CYECHSVFDP  180
RSLGGAAAFP CADCDEVFVK AESLELHRAN RHAVSELGPD DTSRNIVEII FQSSWLRKQA  240
PVCKIDRILK VQSSDRTVKR FEQYKESIKE RASSDEGNKK NPRCVADGNE LLRFHCTTFT  300
CSLGAGGGTA LCRAPSAQCK LCSIIRDGFR VDADGKIATM ATSGRAHDTA QVLSVGEKKA  360
MLVCRVVAGR VTKTSDRKSS ERDCDCDSVS PSSEGVYSDL DELFLFNPRA ILPCFVVIYS  420
GY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019543.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828324.1	0.0	uncharacterized protein LOC112903299
TrEMBL	A0A1E5VQL0	0.0	A0A1E5VQL0_9POAL; Uncharacterized protein
STRING	Sb05g004260.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-82	C2H2-like zinc finger protein