PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019546.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 195aa    MW: 20015.2 Da    PI: 8.9122
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019546.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-161867255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                gykGVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  Do019546.1 18 GYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 67
                8*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-91867IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-221887IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-161869IPR016177DNA-binding domain
PROSITE profilePS5103220.2971887IPR001471AP2/ERF domain
SMARTSM003803.4E-211893IPR001471AP2/ERF domain
CDDcd000188.67E-191988No hitNo description
PRINTSPR003673.4E-81930IPR001471AP2/ERF domain
PRINTSPR003673.4E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MSRAEWAGEA EAAERRRGYK GVRRRRWGKW VSEIRVPGTR ERLWLGSYAT PEAAAVAHDT  60
AVYFLRGGTD AGAGVVAGGD VAALNFPERA AATYGVGAAG SGAPRLSPRS VQRVASDAGM  120
AADAQLVAAR DSTGIGIVIG SAQGQGGGAG ASARLRDQDA DAYMSRTHGS SGSTGASREQ  180
LVAGEISVDD IEILV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019546.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970828.12e-78ethylene-responsive transcription factor ERF020
SwissprotQ9C9I87e-30ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A1E5VGP21e-131A0A1E5VGP2_9POAL; Uncharacterized protein
STRINGGRMZM2G307152_P013e-62(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-19ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]