PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019648.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 227aa    MW: 24079.9 Da    PI: 4.701
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019648.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-184893352
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Do019648.1 48 YRGVRMRA-WGKWVSEIREPCK---KSRIWLGTFPTPEMAARAHDAAALV 93
                9****998.**********854...5*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.65547104IPR001471AP2/ERF domain
PfamPF008479.4E-124793IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3147106IPR001471AP2/ERF domain
SMARTSM003803.2E-3347110IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-2148104IPR016177DNA-binding domain
CDDcd000184.07E-2048105No hitNo description
PRINTSPR003673.0E-104859IPR001471AP2/ERF domain
PRINTSPR003673.0E-107086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSDREVSSPV SSGGTSSPPL SPNETASASR RSGGREKRAQ NDGKHRSYRG VRMRAWGKWV  60
SEIREPCKKS RIWLGTFPTP EMAARAHDAA ALVVKGPAAV LNFPEMATVL PRPASASPSD  120
VQAAAARAAA MELEPSLLAA GSAVAAPVAV QQQQQDEELD AIVELPRLDD DAELVAFGAT  180
SFMFHDAAQA SWCDPMWIDD DAGYLAAAHE DLLGLSADQS VGGLWNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16441051173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019648.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269402e-83KJ726940.1 Zea mays clone pUT3486 AP2-EREBP transcription factor (EREB144) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951388.13e-85ethylene-responsive transcription factor ERF038
TrEMBLA0A1E5V3I61e-162A0A1E5V3I6_9POAL; Dehydration-responsive element-binding protein 3
STRINGSi018222m1e-84(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.13e-33ERF family protein