PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019689.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 662aa    MW: 71198.2 Da    PI: 5.3783
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019689.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.21.3e-2987171187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+++e+laLi++r+em+ ++r++ lk+plWe+v++k++  g++rs+k+Ckek+en+ k+y+++k+ + +r++++s  +++f+qlea
  Do019689.1  87 RWPREETLALIRIRTEMDADFRNAPLKAPLWEDVARKLAGLGYHRSAKKCKEKFENVDKYYRRTKDARAGRQDGKS--YRFFSQLEA 171
                 8*********************************************************************866665..*******85 PP
2trihelix109.52.1e-34409494187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k+ev+aLi++r+e++e++ ++ +k+plWe++++ mr+ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+s+tcpyf+ql+a
  Do019689.1 409 RWPKEEVHALIQLRTEKDEQYHDAGAKGPLWEDIAAGMRRIGYNRSAKRCKEKWENINKYYKKVKESNKRR-PEDSKTCPYFHQLDA 494
                 8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.001284146IPR001005SANT/Myb domain
CDDcd122033.05E-2786151No hitNo description
PfamPF138372.3E-2086172No hitNo description
PROSITE profilePS500906.99287144IPR017877Myb-like domain
SMARTSM007170.0018406468IPR001005SANT/Myb domain
SuperFamilySSF466897.43E-5407477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-4408465IPR009057Homeodomain-like
PROSITE profilePS500907.689408466IPR017877Myb-like domain
CDDcd122031.80E-28408473No hitNo description
PfamPF138373.5E-23409495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MLHHHGGAGA GSPYMDPMAG AAPFAATPTG PLSVAAIPPP PMQLQPAGMT SANFEELPAG  60
GSGAGAAASL VQDDDMPADV VGAGGRRWPR EETLALIRIR TEMDADFRNA PLKAPLWEDV  120
ARKLAGLGYH RSAKKCKEKF ENVDKYYRRT KDARAGRQDG KSYRFFSQLE ALHATAAPPP  180
QQQQQGTGMA LVQADHPPLG TMAWTAIPAT LGPPAGAGGA LPDLSFSSMS GSESDSGSDD  240
DFDVGEASLG KGESDGGGGV DREMMAIFEG MMKQVTEKQD AMQRVFLETL ERWESERSSR  300
EEAWRRQEVA RMNREREQLA RERAAAASRD AALIAFLQRV GGGQGEPVRL PPPITVALPM  360
PAAPMPYRAP PSPRHDAAAA SLQLVPALPK PEEARPWAGG EGSGSMPSRW PKEEVHALIQ  420
LRTEKDEQYH DAGAKGPLWE DIAAGMRRIG YNRSAKRCKE KWENINKYYK KVKESNKRRP  480
EDSKTCPYFH QLDAMYRKKR FAGRGSSTPH GANAAAVAVT VQENPNQREL EGKSSNDVDM  540
SKNDGQVNVH APPGPGNGET APTTTATDAG DKNKMAEDNV KETSVQLQQQ QQFGADETDS  600
DDSDMGGDYT EEGDDEDKTK HEMGFQKPDM IGSSGDVPAP PATASAPMSS AAPTSSTFLA  660
VQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019689.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0548720.0BT054872.1 Zea mays full-length cDNA clone ZM_BFc0165O02 mRNA, complete cds.
GenBankBT0677670.0BT067767.1 Zea mays full-length cDNA clone ZM_BFc0150E20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A1E5VUT80.0A0A1E5VUT8_9POAL; Trihelix transcription factor GT-2
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.18e-45Trihelix family protein