PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019740.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 211aa    MW: 21634.4 Da    PI: 8.6258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019740.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-203585256
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
                + +GVr ++ +gr++AeIrd +     r  r++lg+f+t+e+Aa+a++aa++kl+g+
  Do019740.1 35 RLRGVRKRP-WGRYAAEIRDpV-----RkSRVWLGTFDTPEQAARAYDAAARKLRGP 85
                679******.**********44.....55**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.6E-143484IPR001471AP2/ERF domain
CDDcd000187.05E-183491No hitNo description
PROSITE profilePS5103223.1563592IPR001471AP2/ERF domain
SMARTSM003803.6E-303598IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-213593IPR016177DNA-binding domain
PRINTSPR003671.0E-93647IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-293793IPR001471AP2/ERF domain
PRINTSPR003671.0E-95874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPKSSTSSP AGSSSTSSDG SALRAAAAAA AEQPRLRGVR KRPWGRYAAE IRDPVRKSRV  60
WLGTFDTPEQ AARAYDAAAR KLRGPGATTN YPAAPALAPA ASAADASSTT SSSCRDDGSL  120
AAATTVAVAA PAPSSSSLDL RLELPAMVAA QPYLFLDPTP TVLPAAAAQR QFLPMKSEDQ  180
ERSCCYAGSS SPAVVCLGLD LNLPPPAEMV M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-212898778Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701533e-73EU970153.1 Zea mays clone 340982 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankEU9753883e-73EU975388.1 Zea mays clone 489369 ethylene-responsive transcription factor 4 mRNA, complete cds.
GenBankKJ7277063e-73KJ727706.1 Zea mays clone pUT5645 AP2-EREBP transcription factor (EREB209) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821472.11e-49ethylene-responsive transcription factor ERF098-like
TrEMBLA0A1E5V4M11e-143A0A1E5V4M1_9POAL; Uncharacterized protein
STRINGSi014474m3e-45(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-18ERF domain protein 11