PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019741.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 187aa    MW: 19098.4 Da    PI: 5.2609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019741.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-202776255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                + +GVr ++ +gr++AeIrd +     r  r++lg+f+t+e+Aa+a++aa+++l+g
  Do019741.1 27 RLRGVRKRP-WGRYAAEIRDpV-----RkSRVWLGTFDTPEQAARAYDAAARSLRG 76
                679******.**********44.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-172686No hitNo description
PfamPF008478.9E-142676IPR001471AP2/ERF domain
PROSITE profilePS5103222.9452784IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212785IPR016177DNA-binding domain
SMARTSM003801.7E-312790IPR001471AP2/ERF domain
PRINTSPR003678.7E-102839IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-292985IPR001471AP2/ERF domain
PRINTSPR003678.7E-105066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAPKRSTSPS GSSSSAVCAP ASEEQPRLRG VRKRPWGRYA AEIRDPVRKS RVWLGTFDTP  60
EQAARAYDAA ARSLRGPGAA TNYPAQDPNM AAAGSASGSA VLSEEAASSS SSSRDSLAAP  120
PSLDLSLALP AMVAVAPALL QFLPPKSEEE PSLSFSGSSS SVVFDAAAPA VGVGLDLNLA  180
PPGEMVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-2224931180Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019741.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9490135e-62EU949013.1 Zea mays clone 393795 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821472.18e-70ethylene-responsive transcription factor ERF098-like
TrEMBLA0A1E5V4S81e-125A0A1E5V4S8_9POAL; Uncharacterized protein
STRINGSi014474m1e-59(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144461025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-22ERF domain protein 11