PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019744.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 139aa MW: 14901 Da PI: 9.3858

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019744.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	82.3	5.2e-26	82	127	4	49
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnv 49 + l+cpr s++tkfCy+nny++ qPr++C+ CrryW +GGalr v Do019744.1 82 EPLPCPRWGSRETKFCYFNNYNVRQPRHLCRVCRRYWMAGGALRRV 127 6789****************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-19	82	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-22	83	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	21.343	84	138	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MANLPDADAA GFKLFGKVIQ PPDAHHRATE EGGASTSPPP ALPLATATPE AVLPPAAPPQ 60 SPPLPTLSLQ QAAGAGAGGP GEPLPCPRWG SRETKFCYFN NYNVRQPRHL CRVCRRYWMA 120 GGALRRVGEI VFSELNRHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019744.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061655	3e-50	BT061655.1 Zea mays full-length cDNA clone ZM_BFb0169J01 mRNA, complete cds.
GenBank	EU954609	3e-50	EU954609.1 Zea mays clone 1473007 hypothetical protein mRNA, complete cds.
GenBank	EU977091	3e-50	EU977091.1 Zea mays clone 998767 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021312639.1	6e-41	dof zinc finger protein DOF2.4
TrEMBL	A0A1E5V3D8	2e-96	A0A1E5V3D8_9POAL; Uncharacterized protein
STRING	Sb03g030850.1	1e-39	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14716	16	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29160.1	4e-21	Dof family protein