PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019777.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 435aa    MW: 49827.8 Da    PI: 6.6919
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019777.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.44.5e-24117212185
    trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                 +Wt+++v++Li+a+++++++  ++           +kk++W+++sk+m er +++sp+qC++k+++lnkryk+++++ +++t ++++ + +++d++
  Do019777.1 117 KWTDSMVKLLITAVSYTGDDHAADLgggrrnftmmQKKGKWKAISKVMGERDCHVSPQQCEDKFNDLNKRYKRLTDILGRGTaCDVVANPALLDSI 212
                 7**************99999998644445667777**********************************************548888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.4E-20115239No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MEGNNLPPGS MMQRAPYGSL DLHGNPMQTH APNSGKQIFS NSQMPGTFTM TMNRATEADD  60
FPGFQFKEHG KSDKHHHHHS HHSKNCMSDD EEHDMTEDAT DTPSGKGKKG SAWHRMKWTD  120
SMVKLLITAV SYTGDDHAAD LGGGRRNFTM MQKKGKWKAI SKVMGERDCH VSPQQCEDKF  180
NDLNKRYKRL TDILGRGTAC DVVANPALLD SINHLSDKMK DDAKKILSSK HLFYEEMCSY  240
HNNNRLNLPE DHALQHSLLL ALRCKEEQDP RRDASGDADG ADESADSDYE ENDEEQHPMH  300
TNMREPSMHK RARHGDAALV TSSSHEGSER SDPHGITVDI NKAFPDGTNW ALLQQDLASQ  360
ILEIQKRLLQ IEEKDLELKK QRLKWERFRK KKDREIERMA LENEHMMIEN KRLELELRHK  420
ELELELKLKG QMNHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379390KQRLKWERFRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646920.0EU964692.1 Zea mays clone 280880 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826713.10.0uncharacterized protein LOC112902031
TrEMBLA0A1E5UL520.0A0A1E5UL52_9POAL; Uncharacterized protein
STRINGPavir.Ha01834.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-93sequence-specific DNA binding transcription factors