PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019785.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 175aa    MW: 19508.1 Da    PI: 9.4661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019785.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31111167360
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 DgynWrKYGqK+vkgs fprsYY+Ct+++Cpvk+kve++  d++v e+ Y+geHnh+k
  Do019785.1 111 DGYNWRKYGQKKVKGSGFPRSYYKCTHPSCPVKRKVETTV-DGQVAEVAYSGEHNHPK 167
                 9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-26107168IPR003657WRKY domain
SuperFamilySSF1182901.31E-24108168IPR003657WRKY domain
SMARTSM007741.3E-31109167IPR003657WRKY domain
PfamPF031063.1E-24111166IPR003657WRKY domain
PROSITE profilePS5081122.928111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MQHHEKIAAL KPVASRPFSR SLSKLLQDFT ATGSPPITVL EATDLVRPKV TRFPSPPSPS  60
DLPTETTATI DAVSDTTCEE MEVDTEQANC CDHLTTHHTV KKPMGGRLSF DGYNWRKYGQ  120
KKVKGSGFPR SYYKCTHPSC PVKRKVETTV DGQVAEVAYS GEHNHPKPHR PRKPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-161111681674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019785.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819931.11e-100probable WRKY transcription factor 3
RefseqXP_025819932.11e-100probable WRKY transcription factor 3
TrEMBLA0A1E5V5C41e-127A0A1E5V5C4_9POAL; Uncharacterized protein
STRINGSi014939m4e-97(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.21e-28WRKY family protein