PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do019815.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 616aa    MW: 67621.8 Da    PI: 7.0179
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do019815.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06356381126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 y +  C +f+  G C +G+ CkFaH+
  Do019815.1 356 YQRNVCFDFLNKGKCERGPECKFAHS 381
                 667788899999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073802.71E-3314249No hitNo description
PROSITE profilePS5010314.371323351IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-4323350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5327353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6327351IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6354383IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4355382IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4356381IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652356383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-6356382IPR000571Zinc finger, CCCH-type
PfamPF046771.5E-35392509IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541973.02E-9400498IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.101.7E-6401507IPR011146HIT-like domain
PfamPF046767.8E-17540613IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MAATPPTPAP PRILLAGDAH GRLNQLFKRV KSVNQSTGPF HALLCVGQFF SPDAEGDAEG  60
APGDVTDYLE GRAAVPIPTY FTGDYGPAAP RLLSKAAAGA RGFAPGGIEI CPNLFWLRGS  120
NRFTLHGLSV VYLSGKNGPG GPGCYSQDDV DALRALAEEP GIVDLFLTYP FFFIILFLPL  180
PAMVNGADTS NVPNQVLDPH GYDPVIAELV AEIKPRYHIA GTKGVFYSRE PYVNDSAAHV  240
TRFIGLANVG NKEKQKFIHA ISPTPASTMP SADIHAKPPN ATLSPYAAPA KSVPIEEAPK  300
RPADNTDAQY WRYDVKRQRQ GETEGGRLCF KFTSSGSCPR GSKCNYRHDE EAVEHYQRNV  360
CFDFLNKGKC ERGPECKFAH SLSGDTAVPR PHSERRRVES SCWFCLSSPD VESHLVISIG  420
EAYYCALAKG PLVPNHVLMI PVEHCPSTLM MPPEAEVELG RYKNALGKYF EKQGKTAVYF  480
EWVSQHSRHA NLQVVPVPLS KADAVNKIFH IAAKRLGFEY SVVNPDGGAK AARESLMSQS  540
ESKSSLFYVE LPEGKILMRM IDSNEKFPAQ FGREVLAGLL SMADRADWRN CKLSKEEEIQ  600
MVDDFKKGFH EFDPAE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo019815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799608.10.0zinc finger CCCH domain-containing protein 59
SwissprotQ69NK80.0C3H59_ORYSJ; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A1E5V4N00.0A0A1E5V4N0_9POAL; Zinc finger CCCH domain-containing protein 59
STRINGPavir.Bb02057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10173912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]