PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do019818.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 230aa MW: 23781.2 Da PI: 8.4945

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do019818.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.6	1.8e-37	42	150	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrr+C+++Cv+apyf + + +++fa+vhk+FGasnv k+l+++p + r+da+s+++yeA+ar+ dPvyG+vg+il+lq+q++ + Do019818.1 42 PCGACKFLRRRCVPGCVFAPYFgggsvrehgAGAGAAQFAAVHKVFGASNVAKMLSRVPVSLRRDAASTVCYEAQARIADPVYGCVGTILALQRQVALV 140 7*******************99998877444557*********************************************************** PP DUF260 91 kaelallkee 100 +ael+++++e Do019818.1 141 QAELSVAQTE 150 ***99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.149	41	151	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-40	42	148	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSRAMPPPGK RAGAASAVAA AGPAHAQAQA EEAVPAGGAG APCGACKFLR RRCVPGCVFA 60 PYFGGGSVRE HGAGAGAAQF AAVHKVFGAS NVAKMLSRVP VSLRRDAAST VCYEAQARIA 120 DPVYGCVGTI LALQRQVALV QAELSVAQTE FLNRRLALTT VNPAYSAASP TSQMVNCGSL 180 TQAVDFIDIE PAMRPLPPPL LPSQQLQREE EQQDGGSPTM DVFSHNVLGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-40	38	152	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-40	38	152	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do019818.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970122.1	1e-109	LOB domain-containing protein 4
Swissprot	Q9SRV3	1e-51	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A1E5VEZ6	1e-164	A0A1E5VEZ6_9POAL; LOB domain-containing protein 20
STRING	Si004290m	1e-109	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14085	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	9e-41	LOB domain-containing protein 20