PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020047.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 477aa    MW: 50555.4 Da    PI: 8.3269
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020047.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-055476123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  Do020047.1 54 FVCEICHKGFQRDQNLQLHRRGH 76
                89*******************88 PP
2zf-C2H212.50.00045165183523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsr++++++H   +
  Do020047.1 165 DCGTVFSRRDSFVTHRAFC 183
                 9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.1E-55376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.45E-55376No hitNo description
PROSITE profilePS5015710.6375476IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SuperFamilySSF576671.45E-5130155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MGSDDGDLQR VTGPSEPPPA PPAVKKKRSL PGTPDPSAEV IALSPRTLMA TNRFVCEICH  60
KGFQRDQNLQ LHRRGHNLPW KLRQRGAGGA DGGPPRKRVY VCPEASCVHH NPARALGDLT  120
GIKKHFCRKH GEKKWKCERC AKRYAVHSDW KAHAKVCGTR EYKCDCGTVF SRRDSFVTHR  180
AFCDALAQEN NKLTQPMNMA TVASALLGQA HHLALPPSHQ EADDLDAPED DADDFALDIK  240
SPGLRMLPTT MSDDTAAVGN HTLLPPLTMA GCMLSSLAAR PAPSPSTAFF SGAKIGLDGP  300
GDPTSSMGGG FSPAGSASMS ATALLQKAAE MGATTSGGGF GAGPFSSTVS FGPMLGGPDR  360
LPIMSPFGPP LKTPMMEPPY DGLPLGHTQL VGLDVGRLLP GQQLYGGNVG AAHHHGGVGS  420
MTRAIGSLMH GGGQQQMEHR RPPDDLRVVD YLGVDDHHQR SFSSGVSPFG PHIGPWA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34131198370Zinc finger protein JACKDAW
5b3h_F2e-34131198370Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666520.0BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817951.10.0protein indeterminate-domain 2-like
TrEMBLA0A1E5VGA40.0A0A1E5VGA4_9POAL; Zinc finger protein MAGPIE
STRINGSi001316m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125542534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-101C2H2 family protein