PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020193.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family DBB
Protein Properties Length: 297aa    MW: 31580.4 Da    PI: 4.9414
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020193.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.6e-07447542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                +C+ ++ +++   C  ++  lC+ C    H+       H+++pl
  Do020193.1  4 RCDVCGAEPAAVLCCADEAALCNACDRRVHRAnkladkHRRIPL 47
                8*****************************77999999999886 PP
2zf-B_box24.94.1e-085999337
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                ++ C+ ++e +   fC +++  lC+dC + +H+       H
  Do020193.1 59 APLCDVCKERRGLVFCVEDRAILCADCDEPIHSAndltakH 99
                579*****************************655565555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.253147IPR000315B-box-type zinc finger
CDDcd000218.93E-7347No hitNo description
PfamPF006434.3E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.58457104IPR000315B-box-type zinc finger
SMARTSM003364.1E-1657104IPR000315B-box-type zinc finger
PfamPF006431.1E-559100IPR000315B-box-type zinc finger
CDDcd000217.97E-860104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MLVRCDVCGA EPAAVLCCAD EAALCNACDR RVHRANKLAD KHRRIPLLHP SGDDSATAAP  60
LCDVCKERRG LVFCVEDRAI LCADCDEPIH SANDLTAKHS RFLLIGAKLS AALVDQALPS  120
PDDCRGRGSE EPHDDVAAIC AQAHQDSCRA KSPVPDGSNS CVGGGCSSGS SISDYLTNIC  180
PGWRVDDLLF DDAAFSTATK ASGCDEHEQV PSLDADLFDV VAGRPGKRGA WYGGALGIDK  240
VPAAASIAVP TAAKQQGRVR ERQWDFDSDS DAFAVPEISQ QPRAKMARPE APSFWCF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020193.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0384509e-99BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBankEU9680739e-99EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBankHQ8587769e-99HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812143.11e-161B-box zinc finger protein 20-like
TrEMBLA0A1E5VLE40.0A0A1E5VLE4_9POAL; B-box zinc finger protein 20
STRINGPavir.Db00181.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.16e-44DBB family protein