PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020212.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C3H
Protein Properties Length: 424aa    MW: 44920.7 Da    PI: 7.9883
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020212.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH406.5e-136591127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                ++++lC ++a++GtCk+G++CkF H++
  Do020212.1 65 PGQPLCEYYAKNGTCKFGSNCKFDHPR 91
                589**********************96 PP
2zf-CCCH38.91.5e-12110135227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++++tG+Ck+G++CkF+H++
  Do020212.1 110 GEKECSYYMKTGHCKFGATCKFHHPE 135
                 6789********************96 PP
3zf-CCCH38.32.2e-12263289127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C ++++tG CkyG+ Ck++H++
  Do020212.1 263 PGQPECEHYMKTGNCKYGAACKYHHPQ 289
                 5789*********************97 PP
4zf-CCCH25.81.9e-08311334326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   +C ++a  G+Ck+G++CkF H+
  Do020212.1 311 SQPCAYYAHHGFCKFGPTCKFDHP 334
                 679********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.9156492IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-76491IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-106691IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-66792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-66992IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577108136IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6108135IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4114134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934262290IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6262289IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10264289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5267289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4268287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784308336IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4308335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6310339IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6310334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4312333IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEPYAAGKGG GGGAADASTG LEESMRRLGL GGDGEAAGEG KLPERPGEVN GPGRTAGTVE  60
FPERPGQPLC EYYAKNGTCK FGSNCKFDHP REGGFVPVAL NSSGFPLRQG EKECSYYMKT  120
GHCKFGATCK FHHPELGFLS EAPTMYPPAQ PSPISSSHPY PHLANWQMGR PPVVPGSFLP  180
GSYPPMMLPP TLMPMQGWNP YISPMNQVAP AGVQQTVQAG PPYGLSHQGP ISAVTYGSHY  240
AQLYSSTGTS SSNVPEYTLP DRPGQPECEH YMKTGNCKYG AACKYHHPQY FSGPKSNCVL  300
SPLGLPLRPG SQPCAYYAHH GFCKFGPTCK FDHPIGTLNF SPSVSSLTDV PVAPYPLNLP  360
VTPMATYPSS SDLRPQYTVT KDSSANPPAV PGTTYGPVGT ISKVYAPHTL IRSPASAAAG  420
MQAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967812.10.0zinc finger CCCH domain-containing protein 5
RefseqXP_025815660.10.0uncharacterized protein LOC112892755
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLA0A2T7DPA20.0A0A2T7DPA2_9POAL; Uncharacterized protein
STRINGPavir.Ea00915.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.38e-75C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]