PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020244.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 175aa    MW: 18255.2 Da    PI: 12.2023
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020244.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2384.2e-12691051655
         AP2  16 vAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 vAeIrd p     r +r++lg+f taeeAa+a++ a ++++g
  Do020244.1  69 VAEIRDpP-----RgRRVWLGTFNTAEEAAAAYDTACLRIRG 105
                 8*****99.....56***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.752113IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1465113IPR016177DNA-binding domain
SMARTSM003801.8E-1865119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-2065113IPR001471AP2/ERF domain
CDDcd000186.02E-1966113No hitNo description
PfamPF008475.5E-669105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
LASPPWSHWT DGHNTVHHPI PIQRGRGRRG GGGGGKHEVQ PRAPPDRRGR EGGRGSSDGG  60
GDAGQGRAVA EIRDPPRGRR VWLGTFNTAE EAAAAYDTAC LRIRGPSAST NLPPPPSACC  120
LATSSSPNPR QRARRWRWNA RGEAAVAGRA GLGRGGGGAW PRGAERRWGG MGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020244.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1E5V2W01e-115A0A1E5V2W0_9POAL; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-13cytokinin response factor 1