PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do020481.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

LBD

Protein Properties

Length: 198aa MW: 21525.6 Da PI: 7.8009

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do020481.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	7.8e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ +lal+k+ Do020481.1 13 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQMQLALAKA 111 7***********************************************************************************************998 PP DUF260 100 e 100 e Do020481.1 112 E 112 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.851	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-44	13	110	IPR004883	Lateral organ boundaries, LOB
Gene3D	G3DSA:3.40.50.1820	5.9E-4	37	144	IPR029058	Alpha/Beta hydrolase fold

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAGSGSSSGS SSPCASCKLL RRRCTQECVF APYFPPEDPH KFAIVHKVFG ASNVSKMLQE 60 LPAQQRADAV SSLVYEANAR MRDPVYGCVG AISYLQQQVS QLQMQLALAK AEILCVQIQH 120 DGHAIASPPS ASQQIQRQQQ HQMDAEAYGS LLMQNTLMNT LNSTAVHHQQ QMLGSLGSSG 180 NTAMMLQEAC LKKESLWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-50	6	114	4	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-50	6	114	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do020481.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	1e-102	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661028.1	1e-107	LOB domain-containing protein 12
Swissprot	Q8LBW3	3e-68	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1E5V2X7	1e-144	A0A1E5V2X7_9POAL; LOB domain-containing protein 12
STRING	Si026864m	1e-106	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	9e-58	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]