PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020552.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 203aa    MW: 21861.5 Da    PI: 6.531
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020552.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.54.4e-103482155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                s+ykGV   + +grW A+I++      r +r+ lg+f  +  Aa+a++ a++++ g
  Do020552.1 34 SRYKGVVPQP-NGRWGAQIYE------RhARVLLGTFADEAAAARAYDVAALRFGG 82
                78****9888.8*********......44**********99**********99866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.82E-143490IPR016177DNA-binding domain
PfamPF008471.3E-53482IPR001471AP2/ERF domain
PROSITE profilePS5103218.7423590IPR001471AP2/ERF domain
SMARTSM003803.7E-173596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-163590IPR001471AP2/ERF domain
PRINTSPR003673.1E-53647IPR001471AP2/ERF domain
PRINTSPR003673.1E-57292IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.1E-15141203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-10142203IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-9144203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSASTQEAEQ EQDWMGGDDA AAASPRARSS PSSSRYKGVV PQPNGRWGAQ IYERHARVLL  60
GTFADEAAAA RAYDVAALRF GGRGGAVNFP GPADAAEMAF LAARPKAEVV DMLRKYTYDD  120
ELRQALRSGG DRGHALALVP RVALFEKAVT PSDVGRLNRL VVPKLHAEKH FPPLDEEGTA  180
AAPPVLLAFE DVDGGGKVWQ FRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-191432031268DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020552.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.13e-94AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotP822807e-62RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A1E5W2R01e-143A0A1E5W2R0_9POAL; Putative AP2/ERF and B3 domain-containing protein
STRINGPavir.J00384.1.p9e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-54related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]