PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020574.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 470aa    MW: 50386.1 Da    PI: 7.5736
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020574.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-15107166155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Do020574.1 107 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 166
                 789******************888855566447*************************98 PP
2AP2521.7e-16209260155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Do020574.1 209 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 260
                 89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-16107175IPR016177DNA-binding domain
PfamPF008475.2E-12107166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-15108174IPR001471AP2/ERF domain
PROSITE profilePS5103219.572108174IPR001471AP2/ERF domain
SMARTSM003803.5E-25108180IPR001471AP2/ERF domain
PRINTSPR003673.8E-5109120IPR001471AP2/ERF domain
PfamPF008476.3E-12209260IPR001471AP2/ERF domain
CDDcd000184.40E-23209270No hitNo description
SuperFamilySSF541718.5E-18209270IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-18210269IPR001471AP2/ERF domain
SMARTSM003802.7E-26210274IPR001471AP2/ERF domain
PROSITE profilePS5103218.953210268IPR001471AP2/ERF domain
PRINTSPR003673.8E-5250270IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MPRFAAPTAK LEAANNRDQG NPSGFVAMET YCGLVKDELH GRGGGGQGLY CGAPPRAVPA  60
MTGGGDGVVK SVKRRKREPS AAVTASNGKE EAAGDKSAGS NAAKRSSRFR GVSRHRWTGR  120
FEAHLWDKGT WNPTQKKKGK QVYLGAYNEE EAAARAYDLA ALKYWGPSTY TNFPVVDYEK  180
ELKVMQNVSK EEYLASIRRK SNGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  240
YSTQEEAARA YDIAAIEYRG INAVTNFDLS TYIRWLKPAG AVGEDGSCGT PTSEVRPNMP  300
ASLCLQAGGL LQHPHGAAAG MLQVDVDLYR GHLAAAQQGA SFSGLDDVGS VYAGGPSPTA  360
AALCGRPSPS SSTTALSLLL RSSVFQELVA RNAGAQQQPV GADDGAAVSD VVDAKVEHEE  420
PLGRPEAGGE LGEEMYGAAR AEEEEAFAVS MYDLDDSFAR MEQSLWSCLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975KSVKRRK
2132140PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034874e-71AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037674e-71AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149624e-71AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681620.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1E5VFS80.0A0A1E5VFS8_9POAL; Ethylene-responsive transcription factor WRI1
STRINGSi007857m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-84AP2 family protein