PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do020673.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CPP
Protein Properties Length: 158aa    MW: 18224.8 Da    PI: 8.4419
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do020673.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR27.46.9e-0917431541
         TCR 15 kkYCeCfaagkkCseeCkCedCkNkee 41
                + YC+Cf+ + +Cs+ C+C+dC N+e+
  Do020673.1 17 RSYCSCFHGKGFCSHPCNCQDCWNRED 43
                58**********************986 PP
2TCR27.75.4e-097698224
         TCR  2 ekkgCnCkkskClkkYCeCfaag 24
                + kgC+C ks C+k+YC Cf++ 
  Do020673.1 76 HVKGCTCAKSGCKKNYCLCFKNA 98
                78******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163412.0229121IPR005172CRC domain
SMARTSM011140.0161344IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.8E-51841IPR005172CRC domain
SMARTSM011140.008175107IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.0E-57898IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
LLLLCLAHHQ IFLPRRRSYC SCFHGKGFCS HPCNCQDCWN REDRRTFVEE HAELRLGTKP  60
GACQSKDSAL TGDKNHVKGC TCAKSGCKKN YCLCFKNARP QRNYLLSYMI TQTPLCRVPQ  120
TLTHEAPTTT TRRVPMQVEI DEADQLQNIG DRYDFTWH
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo020673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814306.18e-33protein lin-54-like
TrEMBLA0A1E5VMS61e-115A0A1E5VMS6_9POAL; Uncharacterized protein (Fragment)
STRINGSi002871m1e-31(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.12e-11Tesmin/TSO1-like CXC domain-containing protein