PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021043.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 422aa    MW: 43194.2 Da    PI: 5.8108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021043.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.1e-07321361954
                 HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Do021043.1 321 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 361
                 69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869312361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-13318372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-11318366No hitNo description
Gene3DG3DSA:4.10.280.104.1E-11320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-5321361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MILSESAWSG GGAGGDGGTV LLPPEVGGVE GGSMTVLERL VLDEALAAAI LELQGIQAPA  60
CAGKVQPAAG GVVGEAVAFP SMATPTPAYA DGDADVLQRQ QHHHRHQGAM GMAPDYDLTP  120
ATAAVAVTTV LAAFANAATA VDSGGLVDAP VFSGNDTDAP GAVAATAAAM AATTNQQCEE  180
AGRGSGRRQR RPNRKRKAAE PSSVPAQEST LCSLLASTTA EGGIQIAFST STQAPAGAKR  240
AKPSLSSSGS SSISFDGRNA GANGGVDDPM YEPDTEALAQ VKEMIYRAAA MRPVSLGSED  300
AGERPRRRNV RISSDPQTVA ARQRRERISE RLRVLQKLVP GGAKMDTASM LDEAANYLRF  360
LKSQVRELQT LDRRNYANNV NSSTTPATMA AGPLSYSTGN GGAMPAFAFS AAAEALRGGE  420
GV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321326RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-150AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-150AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-150AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-150CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814680.11e-167transcription factor LATE FLOWERING-like
TrEMBLA0A1E5ULC60.0A0A1E5ULC6_9POAL; Transcription factor bHLH87
STRINGSi003753m1e-161(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-36bHLH family protein