PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021087.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 209aa    MW: 22432.2 Da    PI: 9.6414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021087.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-093382554
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-..STCHHHHHHHHHHHHHH CS
         HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK..lsKaeiLekAveYIksL 54
                 +e+Er+RR++++s   +L +l+Pk     +s K  ++  + L +A  YIk+L
  Do021087.1 33 RKEIERKRRQHMKSLCVKLASLVPKeH---YSSKntMTQQSSLDEAAAYIKKL 82
                579**********************55...45444699999**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-112194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.0452882IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-63386No hitNo description
Gene3DG3DSA:4.10.280.106.4E-133395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-73482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-63488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDVKRSSSSS AAAEGRRNSA SNSSSGGSAA VERKEIERKR RQHMKSLCVK LASLVPKEHY  60
SSKNTMTQQS SLDEAAAYIK KLKERVDELQ QKRSSAQLLA GMRGGGGGGG ASTPAGTTTT  120
SSGAGSEEAD EEAMAAPPVV EVRHHNDGSS LEVVLISSVA RPFKLHEVVT VLEEEGAEII  180
NANFSVAGRK IFYTIHSRVY RLFIYTSFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13641ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021087.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967960.12e-91transcription factor bHLH162
RefseqXP_012701590.12e-91transcription factor bHLH162
TrEMBLA0A1E5VNC81e-149A0A1E5VNC8_9POAL; Uncharacterized protein
STRINGPavir.Ea00786.1.p1e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-15bHLH family protein