PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021110.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 459aa    MW: 48291.2 Da    PI: 8.6852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021110.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18213263256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++ + kl+ge
  Do021110.1 213 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAMAYDREAFKLRGE 263
                 59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.42E-31212271No hitNo description
PROSITE profilePS5103222.787213270IPR001471AP2/ERF domain
SMARTSM003804.7E-37213276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31213271IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23213272IPR016177DNA-binding domain
PRINTSPR003673.2E-10214225IPR001471AP2/ERF domain
PfamPF008477.4E-12214263IPR001471AP2/ERF domain
PRINTSPR003673.2E-10236252IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MDASSASGEG GGGAGGGRGG RRWKGKGVTP IQPRRQLAPV MEDASAASLR PLKKIGRGPD  60
RLFQRSASSL STSSSAPPSP RGSATSPSAA AAASPPSARR IFPFAYEHSA PVGGAPGLQL  120
PPWQQHSSTS SQPASPQQQQ QQAPLQRQQM ISFGAPPEYQ AQFLLPEGAQ QQQHLLRYWS  180
EALNLSPRGG EAAAVLPSLY QHLLRAPPPP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL  240
GTFDSAEDAA MAYDREAFKL RGENARLNFP DRFFGKGHSG GSGRTSASSA DTPTAAAGSG  300
SSSSSSPPQT PDEASTQHTP PPKAEGSLDN QPQPPVAASS QQEGSCGHTS MPVSAEMIHA  360
PVAHGSEWGP ADEAWFSAWG PGSSFWDYDM DSSSTPGLFL HGRFAGDEAG MEHSSAQGTT  420
ATAAAATGTD MSCDHVPVTP AASSSPLHPQ SPRSPTFMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19212272465ATERF1
3gcc_A2e-19212272465ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824927.10.0ethylene-responsive transcription factor ERF054-like isoform X1
TrEMBLA0A1E5WGM00.0A0A1E5WGM0_9POAL; Ethylene-responsive transcription factor ERF053
STRINGSi012169m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-35ERF family protein