PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021132.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family B3
Protein Properties Length: 897aa    MW: 99227.4 Da    PI: 9.8748
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021132.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-143682086
                HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                  f++++g+ +++ +tl+       sW v    +k+s +y+l kGW++F+++n+LkegD+++F +++
  Do021132.1  3 TAFCDAIGLREPCMITLRTSMDGTGSWLVHGLTCKGS-SYLLVKGWRQFCQENHLKEGDICTFNVIE 68
                679999999988865555444555*******544444.7************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.576180IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14380IPR015300DNA-binding pseudobarrel domain
CDDcd100175.50E-9364No hitNo description
SuperFamilySSF1019362.94E-14379IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-10469IPR003340B3 DNA binding domain
PROSITE profilePS508637.979167260IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-8180259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-7180258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-4278356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-5517577IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-6518591IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-4578592IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-5629677IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-4631675IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.202635673IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
LATAFCDAIG LREPCMITLR TSMDGTGSWL VHGLTCKGSS YLLVKGWRQF CQENHLKEGD  60
ICTFNVIETT LWNVVITRHK EKMNQFSYET PKNKKDRSST DGQKRPQGST TYLNKTRTKS  120
VFAIGPPAWI KKEINASTIE NHPPKELHSH PAGATAMASS GGRGAAAGKH LRVLLPFTCD  180
SLRIPDELAE ETGADEALVV GPPGSGKEVW PVEVGQEGDG AFLGRGWPEF AGACGVAAGW  240
LLIVRHRGRG VLTVKAFDSC RRLRELCAPP AVEATPSSKG APHKPQFISV LRPESLEKML  300
IPAKFVQHCI PKEHLKGCMA IVLGPLGKIG NMMFTLKVFE SNGCQRGSRN KDIRMLEDME  360
EQPPSVCTQK CCRNREKKSK GPMTRLDKAS LLIRSVYEIG PRSWIKKQIN ANTLNELALA  420
TSFCDAIGLR EPCTIMLKTS MNSTKSWQLT ESQSLTGHLR PRAAMASSGS HSAAVAAAAR  480
KHLRVLLPFS CDSLVTRLHH PAARSEAKKT PIRGTNCSRT FLQRLPDELA GEIGAGEEAL  540
VVVPFGQGKV RRVEVGRDGG GAFLGRGWPE FAAACVVGAG WVVLLRHHGG GSGSSVLHPQ  600
FKLPSVAKTT SRRPQFISVL SPDSMEKMIN QSDVFFAGGW SQFMAFHGIT AANSVLLRNE  660
GNMVFTGKVF EPNGCRRESK HKQIGIQQSE KNTNKFIMFL YLLAVDLNVS LRLIYMFLSS  720
LSSITLPDLE KQQEAPSASI QNCKRENDWP SGERQNIPKG SFQMKPLYEI GAQSWIKKVI  780
NTNTLEKHLE TPENRKDWSS SDGQIRPKCS MAYLKQSNTK CVFEIGPPAW IRKEISDITI  840
EKHFNFPLPF CEMIGLQHHS MVRLKTSTSS TKSWLVHLFL YQNFWSAGRV RLEEFLP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021132.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825040.11e-100putative B3 domain-containing protein Os04g0347400 isoform X2
TrEMBLA0A3L6Q5T31e-103A0A3L6Q5T3_PANMI; Putative B3 domain-containing protein
STRINGPavir.Gb02557.1.p1e-116(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187