PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021379.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 222aa    MW: 24102 Da    PI: 9.4164
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021379.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY352.9e-11124146123
                 ---SS-EEEEEEE--TT-SS-EE CS
        WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                 ldDgy+WrKYG+K vk+s++prs
  Do021379.1 124 LDDGYRWRKYGKKLVKNSPNPRS 146
                 59********************9 PP
2WRKY51.52e-161602001959
                 SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  19 efprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +  r+YYrC+ +gC+vkk+ver+++d ++v++tY g Hnh+
  Do021379.1 160 HACRNYYRCSNEGCQVKKRVERARDDARFVITTYDGVHNHP 200
                 568*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-30111200IPR003657WRKY domain
SuperFamilySSF1182902.35E-21117201IPR003657WRKY domain
PROSITE profilePS5081127.244119202IPR003657WRKY domain
SMARTSM007744.9E-32124201IPR003657WRKY domain
PfamPF031061.5E-16125200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSSSSLSPAD WIGGGEFVGI GVGEELYLPS EAAFHVEQQA PAPPLFDTLQ ADYRASGGAG  60
SSSEGEPGKQ SQTEASALSS SEGLAIHDNG CFTCAAAGAR SLPLPARKDG SKIAFKTRSD  120
VDVLDDGYRW RKYGKKLVKN SPNPRSRRRL AACLTLRRMH ACRNYYRCSN EGCQVKKRVE  180
RARDDARFVI TTYDGVHNHP AAPPARPLRG YRLADPPQGH RV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21114199774Probable WRKY transcription factor 4
2lex_A2e-21114199774Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021379.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033415e-44AP003341.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06.
GenBankAP0034925e-44AP003492.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0712E02.
GenBankAP0149575e-44AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126095e-44CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969405.12e-69probable WRKY transcription factor 50
TrEMBLA0A1E5UKQ01e-163A0A1E5UKQ0_9POAL; Putative WRKY transcription factor 50
STRINGPavir.Eb02454.1.p1e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-32WRKY DNA-binding protein 50