PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021403.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family HSF
Protein Properties Length: 525aa    MW: 57717.1 Da    PI: 5.0359
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021403.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.73.6e-28251602101
                   HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT....................... CS
  HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks....................... 74 
                   Fl k+ye+++d+  + ++sws +++ sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+Y  ++  ++                             
    Do021403.1  25 FLLKTYEMVDDPLSDAVVSWSdASNGSFVVWNPPEFAARMLPAYFKHSNFSSFIRQLNTYVRNNHPTSP----Fppfsaleyrcaarvgdlvrycgr 117
                   9********************77789**********************************654444444....14455899***************9 PP

                   ................XTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  75 ................kekiweFkhksFkkgkkellekikrkk 101
                                   +++ weF++++F kg+k+ll++i+r+k
    Do021403.1 118 gagnlgvevaqgfrkiDPERWEFANEYFVKGQKHLLKNIHRRK 160
                   999999988877765449***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-322192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-4221159IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-262191IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.9E-122548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-2525159IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-126476IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-127789IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.18E-26126159IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.2E-32127159IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MEVAGARGSG GGGGGGGGAG GPAPFLLKTY EMVDDPLSDA VVSWSDASNG SFVVWNPPEF  60
AARMLPAYFK HSNFSSFIRQ LNTYVRNNHP TSPFPPFSAL EYRCAARVGD LVRYCGRGAG  120
NLGVEVAQGF RKIDPERWEF ANEYFVKGQK HLLKNIHRRK PIHSHSHQPG ALPDNERALF  180
EDEIDRLSRE KTALQADLWK FNQQQSGAVS QIEDLERRVL DMEQRQVKLL SFLQQASKNP  240
QFVSKLIKMA EASPIFADAF HKKRRLPGLE CSTEAAETTS SFYDDHSSTS RQEMGNILNQ  300
HFSDKLKLGL CPAMTESNLI TLSTQSSYED NGSPHGKHPD CERTGVECLP LVPQMMELSD  360
TGTSICPSKS VSFTAAVNDD GILPCHLNLT LASCLMDVNR SQVSNANGDA MEEEKDDQPE  420
ATAATMDEGN GIGRCYDDTQ NKALGDPATA ADTTTPPHGD SQAPPEEPAA PPVVANDKFW  480
EQFLTERPGC SEAEEASSTL RRDSDHRQAY EDTRSDRRDM GQLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-1651591129Heat shock factor protein 1
5d5v_B5e-1651591129Heat shock factor protein 1
5d5v_D5e-1651591129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424090.0BT042409.1 Zea mays full-length cDNA clone ZM_BFb0221P10 mRNA, complete cds.
GenBankEU9741540.0EU974154.1 Zea mays clone 441220 heat shock transcription factor like protein mRNA, complete cds.
GenBankKJ7276880.0KJ727688.1 Zea mays clone pUT5627 HSF transcription factor (HSF29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952518.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A1E5VZU50.0A0A1E5VZU5_9POAL; Heat stress transcription factor A-5
STRINGSi019082m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-109HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]