PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021446.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 287aa    MW: 31974.8 Da    PI: 7.0293
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021446.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.34.2e-51101411128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                 lppGfrF P+deelv++yL+ kv++++l  +   + evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd+ +++    
  Do021446.1  10 LPPGFRFYPSDEELVCHYLHSKVANERLAGAGGaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDRVIHNPkva 108
                 79*************************7765545***************87788999************************************998888 PP

         NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++++vg++ktLvfy+grap+g kt+Wvmhe+r+
  Do021446.1 109 GRAVVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 141
                 8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-607160IPR003441NAC domain
PROSITE profilePS5100557.76610160IPR003441NAC domain
PfamPF023659.6E-2811141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHS KVANERLAGA GGAMVEVDLH THEPWELPDV  60
AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIHNPKVAGR AVVGMRKTLV  120
FYRGRAPNGI KTSWVMHEFR MENPNTPPKE DWVLCRVFYK KKADAMDYAM DNEQDVAVPR  180
SADHPSYSPR FPALGSNHFH HLPPPSSDHH GALSDFPAMA LLHHQHNSIF DFHAQPHDGG  240
NVLAAAAAAA GSTDGSGAGD QCGSGVLIDL GLDEHYSNYS YNSLMQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-4811654169NO APICAL MERISTEM PROTEIN
1ut4_B4e-4811654169NO APICAL MERISTEM PROTEIN
1ut7_A4e-4811654169NO APICAL MERISTEM PROTEIN
1ut7_B4e-4811654169NO APICAL MERISTEM PROTEIN
3swm_A5e-4811657172NAC domain-containing protein 19
3swm_B5e-4811657172NAC domain-containing protein 19
3swm_C5e-4811657172NAC domain-containing protein 19
3swm_D5e-4811657172NAC domain-containing protein 19
3swp_A5e-4811657172NAC domain-containing protein 19
3swp_B5e-4811657172NAC domain-containing protein 19
3swp_C5e-4811657172NAC domain-containing protein 19
3swp_D5e-4811657172NAC domain-containing protein 19
4dul_A4e-4811654169NAC domain-containing protein 19
4dul_B4e-4811654169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021446.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640021e-148AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824302.10.0protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ9FLJ27e-61NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1E5V0170.0A0A1E5V017_9POAL; NAC domain-containing protein 100
STRINGPavir.Aa00144.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-81NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]