PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021464.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YB
Protein Properties Length: 118aa    MW: 13125.9 Da    PI: 4.4961
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021464.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB621.3e-192633697
       NF-YB 36 qecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                ++cv+ef + v       c+r++r+ti+gddl+  + +lGf+dyv pl+ yl++yre eg++
  Do021464.1  2 DQCVAEFSTVVMRAPKVECRRDRRQTITGDDLIVGMRSLGFDDYVGPLTEYLRRYRESEGQR 63
                78***********99********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-16169IPR009072Histone-fold
SuperFamilySSF471137.33E-13371IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MDQCVAEFST VVMRAPKVEC RRDRRQTITG DDLIVGMRSL GFDDYVGPLT EYLRRYRESE  60
GQRRSRRSAM PPPAPALVAP TTEAEALPLP PGLTLQLVPP SLRDVTEMPP ADVGDDEE
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021464.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813092.18e-33nuclear transcription factor Y subunit B-4-like
TrEMBLA0A1E5VZ371e-77A0A1E5VZ37_9POAL; Uncharacterized protein
STRINGSi007865m8e-32(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.18e-14nuclear factor Y, subunit B10