PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021606.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 120aa    MW: 12894.6 Da    PI: 9.6567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021606.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-16243954
         AP2  9 dkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
                ++ +g+W+AeIr  p     r +r +lg+f+taeeAa a+++a+ +l+
  Do021606.1  2 RP-WGKWAAEIRApP-----RnRRLWLGTFDTAEEAALAYDRAAYRLR 43
                67.**********88.....34***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.5E-25154IPR001471AP2/ERF domain
PfamPF008472.2E-10143IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-18154IPR016177DNA-binding domain
CDDcd000183.72E-24154No hitNo description
PROSITE profilePS5103220.139152IPR001471AP2/ERF domain
SMARTSM003802.0E-22158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
QRPWGKWAAE IRAPPRNRRL WLGTFDTAEE AALAYDRAAY RLRVDAARLN FPDNAAPRAP  60
LDPAVDAKLQ AICATIAAAS SAKGGKAKSR ATPINVPVVE VEAYPSNSSS DEANQPVIVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-191521163ATERF1
3gcc_A6e-191521163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021606.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7423454e-80KP742345.1 Saccharum spontaneum NAC1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820073.13e-51ethylene-responsive transcription factor RAP2-13-like
SwissprotQ9LM153e-29RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A1E5W4J19e-79A0A1E5W4J1_9POAL; Uncharacterized protein (Fragment)
STRINGPavir.Fa01600.1.p7e-54(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-12ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]