PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021678.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 374aa    MW: 39865.5 Da    PI: 5.1987
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021678.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.12.4e-051654537
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                 C+ +   ++  +C+ ++  lC  C  + H g       H
  Do021678.1 16 ACDFCTGLPAVVYCRADSARLCLPCDRHVH-GantvstrH 54
                7***************************99.434555555 PP
2CCT64.43.5e-22330371344
         CCT   3 aallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                   ++RYkeKrk+R+F+K+irYesRKa+A+ R R+KGrF+k+ 
  Do021678.1 330 TVISRYKEKRKNRRFDKQIRYESRKARADGRLRIKGRFAKSG 371
                 5689***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.2E-101259IPR000315B-box-type zinc finger
PROSITE profilePS501199.6841259IPR000315B-box-type zinc finger
CDDcd000216.34E-61759No hitNo description
PROSITE profilePS5101714.932328370IPR010402CCT domain
PfamPF062031.4E-16330370IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSSTDAAGKE MPAAAACDFC TGLPAVVYCR ADSARLCLPC DRHVHGANTV STRHARAPLC  60
AACRAAAAAF RRGGAGYCGF LCANCDFEEE RHRDGDPRPL HDRGTVEGYA GCPSIAELAA  120
ILGVGGCEKA AAAGDGWWPA WEEPQVLRLE DVIVPTTSCH GLQPLVLTPS SPENRSSGGK  180
LTEEAIRQLG ELAKSEAAAM AYAEAEPADG EQLPSWASSE YGIGDGDFGD FDTEACHEAA  240
TMAVHCCEHE EWIATDDCNG ACGMALQQEP APASSSAEPC LSSFVEMSEI CPSMKLSSSV  300
DNGSSNREPV VTTPAKKKGG YDVAYPDRGT VISRYKEKRK NRRFDKQIRY ESRKARADGR  360
LRIKGRFAKS GETS
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432260.0AC243226.1 Panicum virgatum clone PV_ABa006-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799929.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1E5VUY30.0A0A1E5VUY3_9POAL; Uncharacterized protein
STRINGPavir.Ba00179.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37592222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.21e-20B-box type zinc finger protein with CCT domain