PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021730.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 316aa    MW: 33628.9 Da    PI: 10.1027
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021730.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.41.6e-2258147186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +Wt++e+laLi+a+r+++e+lr+g+l++++W++v++++        +   +s +qC++k+e+l+kry++++ +  +r+++   ++p+f  l+
  Do021730.1  58 CWTHEETLALIQAYRDRWEALRKGNLRAADWDDVANAVtarcgrFPTATPKSGVQCRHKIEKLRKRYRAERSRXAGRSKG--PKWPFFPLLH 147
                 8*************************************998888788899*************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.9E-2257148No hitNo description
SMARTSM005959.1E-666150IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSSTSDAAR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG GGIGLGGGAS GRRLPPPCWT  60
HEETLALIQA YRDRWEALRK GNLRAADWDD VANAVTARCG RFPTATPKSG VQCRHKIEKL  120
RKRYRAERSR XAGRSKGPKW PFFPLLHDLA GGGVPDPSPN AIVKIKTKGP VPPASPPSPM  180
SSPSSEEAVR SRSLHGLISN GGAGSGLRFT IPKASRSKPA GVAAVKPERS GGEDDGESEA  240
MAEVADALRA VGERFLRMEE RRLELSLQME KERMECEMKR TQTMLDAQQL FLEAFLGKQQ  300
HKKARLSPAS TAMEED
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9599370.0EU959937.1 Zea mays clone 220734 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798156.11e-178trihelix transcription factor ASIL1
TrEMBLA0A1E5V2R80.0A0A1E5V2R8_9POAL; Uncharacterized protein
STRINGSi036682m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-22Trihelix family protein