PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do021799.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 133aa    MW: 13375.1 Da    PI: 11.7822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do021799.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.1e-192070256
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                +y+GVr+++ +gr++AeIrdp     r + ++lg+f++ae Aa+a++aa+++++g+
  Do021799.1 20 KYRGVRRRP-SGRYAAEIRDP---A-RkTPIWLGTFDSAEAAARAYDAAARSIRGA 70
                8********.7*********8...2.35*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-122069IPR001471AP2/ERF domain
SMARTSM003802.3E-322083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-302079IPR001471AP2/ERF domain
CDDcd000184.59E-132076No hitNo description
SuperFamilySSF541712.88E-212078IPR016177DNA-binding domain
PROSITE profilePS5103221.9182077IPR001471AP2/ERF domain
PRINTSPR003674.7E-82132IPR001471AP2/ERF domain
PRINTSPR003674.7E-84359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MRRARLPPVP AALAGDAEVK YRGVRRRPSG RYAAEIRDPA RKTPIWLGTF DSAEAAARAY  60
DAAARSIRGA AARTNFPSSA SPAVAVAPPV VPPPLHHTVT APAAVAAAAA AATSSHSSTV  120
ESWSGGVGGG AAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2020861481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo021799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9660015e-80EU966001.1 Zea mays clone 290693 ethylene-responsive transcription factor 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197974.14e-35ethylene-responsive transcription factor 3-like
TrEMBLA0A1E5VBL97e-83A0A1E5VBL9_9POAL; Uncharacterized protein (Fragment)
STRINGGRMZM2G052720_P015e-30(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.12e-13ethylene response factor 8