PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022002.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 304aa    MW: 31975.6 Da    PI: 7.282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022002.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.98.1e-21122171255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Do022002.1 122 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 171
                 59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-31121181No hitNo description
Gene3DG3DSA:3.30.730.109.5E-33122181IPR001471AP2/ERF domain
PROSITE profilePS5103223.354122179IPR001471AP2/ERF domain
SMARTSM003801.5E-35122185IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-23122181IPR016177DNA-binding domain
PfamPF008477.7E-15123171IPR001471AP2/ERF domain
PRINTSPR003672.6E-11123134IPR001471AP2/ERF domain
PRINTSPR003672.6E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAATTDLSGE ELMRALEPFI RDASAPHGSS PLLHHHHPLS PTSPFSFHNA AAAAAAYGGG  60
YPYAAAGAEG AGQLSPAQMQ YIQARLHLQR QAQSSVLGPR AQPMKVSSAA AAAPAPPRPQ  120
KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDQAAYRLR GDAARLNFPD  180
NAASRGPLHA SVDAKLQQLC QNIAASKKGA KKSAAAAAAA ATTSSSAPTS NCSSPSSDDA  240
SSSCLESAAE SSCPSPSPSA SPEPAVPEMQ QLDFSEAPWD EVAGFALTKY PSYEIDWDSL  300
LAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20121179463ATERF1
3gcc_A4e-20121179463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278360.0KJ727836.1 Zea mays clone pUT5789 AP2-EREBP transcription factor (EREB109) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956678.11e-174ethylene-responsive transcription factor RAP2-13
TrEMBLA0A1E5UYQ70.0A0A1E5UYQ7_9POAL; Ethylene-responsive transcription factor ERF060
STRINGSi030684m1e-173(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.17e-36ERF family protein