PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022105.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 340aa    MW: 37350.8 Da    PI: 4.8877
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022105.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l++++k++G g+W++ ++  g+ R++k+c++rw +yl
       Do022105.1 14 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.33e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l
       Do022105.1  67 RGNISEEEEEMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                      7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.718961IPR017930Myb domain
SuperFamilySSF466892.43E-2911108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002492.4E-161461IPR001005SANT/Myb domain
CDDcd001675.82E-121661No hitNo description
PROSITE profilePS5129425.32362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565115IPR009057Homeodomain-like
SMARTSM007174.4E-1766114IPR001005SANT/Myb domain
PfamPF002492.0E-1567112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEILARYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI SEEEEEMIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRAADFR  120
DGVVVNVDLS KLPGGGKRRG GRASRGIMAA SKAGKEKKMK QKEKDKGKNK VAEAEKQEQE  180
RKEDHDMAVS TPASSDSQQC ATAQSEEQAQ ASASGVTSAG PEEEDPLALS EEMMSALLGP  240
GSPKLEVGLD GSCMYSDSGP SVVDRESGPT GDVAQELGDK AIMDWDLMGL DISTGTAADD  300
MWDSLVWDYA ADMDMAVPDG GHRQQQEEEV MSDLFFLDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24121155107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794110.0HF679411.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB5 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967542.11e-169myb-related protein P
TrEMBLA0A1E5UY290.0A0A1E5UY29_9POAL; Myb-related protein P
STRINGSi002107m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-71myb domain protein 12