PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022303.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 250aa    MW: 27780.8 Da    PI: 8.5612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022303.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv +++ +G g+W++ ++  g+ R++k+c++rw +yl
       Do022303.1 14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding54.33.2e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Ed+l+++++ + G++ W++Ia++++ gRt++++k++w+++
       Do022303.1  67 RGNFTADEDDLIIKLHSLVGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.558961IPR017930Myb domain
SuperFamilySSF466894.12E-2913108IPR009057Homeodomain-like
SMARTSM007173.2E-131363IPR001005SANT/Myb domain
PfamPF002495.1E-151461IPR001005SANT/Myb domain
CDDcd001671.43E-101661No hitNo description
PROSITE profilePS5129427.87862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2765116IPR009057Homeodomain-like
SMARTSM007177.5E-1766114IPR001005SANT/Myb domain
PfamPF002496.2E-1667111IPR001005SANT/Myb domain
CDDcd001671.94E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TADEDDLIIK LHSLVGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLIGRG  120
IDPVTHRPIA DHGGNATISF QPIAAAHAPE QRKATEATDK PPRCPDLNLD LCISPPCHDY  180
EEDDQLELKP VVVVKRELLQ AGHGHGHGGD LCFGCSLGLQ KGTAGCSCSN KHHFLGLRAG  240
MLDFRGLEMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2991881e-173JF299188.1 Panicum virgatum R2R3-MYB transcriptional factor PvMYB4d mRNA, complete cds.
GenBankJF2991891e-173JF299189.1 Panicum virgatum R2R3-MYB transcriptional factor PvMYB4e mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822035.11e-147myb-related protein Zm38-like
SwissprotP200251e-129MYB38_MAIZE; Myb-related protein Zm38
TrEMBLA0A1E5WEA30.0A0A1E5WEA3_9POAL; Myb-related protein Zm38
STRINGSb07g024890.11e-138(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.18e-95myb domain protein 4
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]