PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do022377.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

GRAS

Protein Properties

Length: 729aa MW: 81019.7 Da PI: 5.6325

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do022377.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	338.8	9.6e-104	349	720	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lL++cA+avs +d + a++lL r+++++sp gd++qRla++f+e+L+arla+++s++yk+l++++ts +e l+a++l+ v+ + +++ N Do022377.1 349 HTLLIHCAQAVSMDDRQSATRLLRRIRQHSSPIGDANQRLAHCFAEGLEARLAGMGSQVYKSLKAKRTS---LVEYLKAYQLYLTVCCFKMMAYRFSNM 444 679**************************************************************99...*********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +I +a++g +++Hi+D+++ +G+QWp+Ll La+R++gpp++RiTg++ p++g + +++etg+rL+k A+++gvpf+f+ +a ++e++ + +L+++ Do022377.1 445 TIANAIAGRKKLHIVDYGLRHGIQWPSLLGWLATREGGPPEVRITGIDLPQPGfrPAAQIKETGRRLSKCAHQFGVPFKFQS-IAAKWETVCVGDLNID 542 *************************************************99*************************.799********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++E+l++n + +l+de v++ s +rd vL+ +++++P+v+++++ + +h ++ F++rf e l ++salfd+l+a++p ++++r vEr l+gr + Do022377.1 543 RDEVLVINGLFDFGNLMDEGVDIYSpsPRDVVLSNIRKMQPDVFILCNINGSHAAPFFVTRFREVLFFFSALFDMLDATVPWDNDQRLLVERDLFGRFA 641 *****************9988779******************************************************************* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +nv+aceg++r+erhet+++W+ r ++aG++++pl+ +++k ++ ++ + + + ++ ++++l+ gWk+r + ++S W Do022377.1 642 MNVIACEGSDRVERHETYKQWQVRNHRAGLQQLPLDPDIVKVVRKKVKDGYHKDFVIDVDNQWLLEGWKGRIICAMSTW 720 *********************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.307	322	701	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.3E-101	349	720	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MAATPESTGT ADAEPFSPSA FLDLPPTPRP VGDFEDPAAS SDDLVLPFIS RMLMEEDIDD 60 KFFYHYPDHP ALLQVQQPYA QILSDAAAAS DSFTANNNGS DSCTLSPSSD ALSFANATRA 120 YHPACPGMGA GIDEFAAHDV NQLFFPQQDA ASARFPNGIE SSVLLDGAEE TTKTTTSPPT 180 VEGEHGAPAS TFPSFSGQNR VSMDMLNQAF LRGMEEAKKF LPTDNSLLVE ARGSKLSQGI 240 AAGEVRTEEK VDAMLTFQGI GGNGRGRKNR CNWQHVETET NRNSKLMVPE PEETGEMVDE 300 IIVNEYRLCL NGMLGMRIAM DSRDGKNISK GNGKSALGRQ RSNEVVDLHT LLIHCAQAVS 360 MDDRQSATRL LRRIRQHSSP IGDANQRLAH CFAEGLEARL AGMGSQVYKS LKAKRTSLVE 420 YLKAYQLYLT VCCFKMMAYR FSNMTIANAI AGRKKLHIVD YGLRHGIQWP SLLGWLATRE 480 GGPPEVRITG IDLPQPGFRP AAQIKETGRR LSKCAHQFGV PFKFQSIAAK WETVCVGDLN 540 IDRDEVLVIN GLFDFGNLMD EGVDIYSPSP RDVVLSNIRK MQPDVFILCN INGSHAAPFF 600 VTRFREVLFF FSALFDMLDA TVPWDNDQRL LVERDLFGRF AMNVIACEGS DRVERHETYK 660 QWQVRNHRAG LQQLPLDPDI VKVVRKKVKD GYHKDFVIDV DNQWLLEGWK GRIICAMSTW 720 IADDDFSEH

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MAATPESTGT ADAEPFSPSA FLDLPPTPRP VGDFEDPAAS SDDLVLPFIS RMLMEEDIDD  60
KFFYHYPDHP ALLQVQQPYA QILSDAAAAS DSFTANNNGS DSCTLSPSSD ALSFANATRA  120
YHPACPGMGA GIDEFAAHDV NQLFFPQQDA ASARFPNGIE SSVLLDGAEE TTKTTTSPPT  180
VEGEHGAPAS TFPSFSGQNR VSMDMLNQAF LRGMEEAKKF LPTDNSLLVE ARGSKLSQGI  240
AAGEVRTEEK VDAMLTFQGI GGNGRGRKNR CNWQHVETET NRNSKLMVPE PEETGEMVDE  300
IIVNEYRLCL NGMLGMRIAM DSRDGKNISK GNGKSALGRQ RSNEVVDLHT LLIHCAQAVS  360
MDDRQSATRL LRRIRQHSSP IGDANQRLAH CFAEGLEARL AGMGSQVYKS LKAKRTSLVE  420
YLKAYQLYLT VCCFKMMAYR FSNMTIANAI AGRKKLHIVD YGLRHGIQWP SLLGWLATRE  480
GGPPEVRITG IDLPQPGFRP AAQIKETGRR LSKCAHQFGV PFKFQSIAAK WETVCVGDLN  540
IDRDEVLVIN GLFDFGNLMD EGVDIYSPSP RDVVLSNIRK MQPDVFILCN INGSHAAPFF  600
VTRFREVLFF FSALFDMLDA TVPWDNDQRL LVERDLFGRF AMNVIACEGS DRVERHETYK  660
QWQVRNHRAG LQQLPLDPDI VKVVRKKVKD GYHKDFVIDV DNQWLLEGWK GRIICAMSTW  720
IADDDFSEH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-41	354	720	25	378	Protein SCARECROW
5b3h_A	2e-41	354	720	24	377	Protein SCARECROW
5b3h_D	2e-41	354	720	24	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do022377.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002462924.1	0.0	scarecrow-like protein 34
TrEMBL	A0A1E5WAU3	0.0	A0A1E5WAU3_9POAL; Scarecrow-like protein 9
STRING	Sb02g034550.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-145	GRAS family protein