PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022399.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MIKC_MADS
Protein Properties Length: 187aa    MW: 21270.1 Da    PI: 9.2553
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022399.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.91.3e-231157248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                rie+   rqv fskRr+g+lKKA+ELS LCdaeva+++fs+ gklye
  Do022399.1 11 RIEERASRQVRFSKRRAGLLKKAFELSLLCDAEVALLVFSPAGKLYE 57
                89********************************************8 PP
2K-box13.53.1e-061321565074
       K-box  50 eLqqLeqqLekslkkiRskKnelll 74 
                 eL++Le+ L ++l+  Rs+Kn+ ++
  Do022399.1 132 ELEKLENLLRNALRDTRSRKNKDMT 156
                 9********************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.408258IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-27261IPR002100Transcription factor, MADS-box
CDDcd002652.39E-31388No hitNo description
PRINTSPR004049.8E-25424IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-23458IPR002100Transcription factor, MADS-box
PfamPF003197.9E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-252439IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-253960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MPRRGRVELR RIEERASRQV RFSKRRAGLL KKAFELSLLC DAEVALLVFS PAGKLYEMFL  60
LFGGGHGIPV VGHRIEDSYS RYQQFSGAER NTNGDRNRND NKDEASTDLL STLRKISTWS  120
CQSNADESDA IELEKLENLL RNALRDTRSR KNKDMTPDCF GIVLLPQAGH FNETHTFPGG  180
FLTSIFF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022399.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848196e-68KF184819.1 Saccharum hybrid cultivar R570 clone BAC 004J16 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673731.11e-69MADS-box transcription factor 51
SwissprotQ9XJ611e-52MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A1E5V2021e-135A0A1E5V202_9POAL; Uncharacterized protein
STRINGPavir.J02739.1.p2e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.15e-25AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]