PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022443.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NF-YA
Protein Properties Length: 242aa    MW: 25803.1 Da    PI: 10.3422
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022443.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.1e-29117173158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep+YVNaKQ+++Il+RR +Rak++++ ++ +++rkpylheSRh hAlrR+Rg+gGrF
  Do022443.1 117 DEPVYVNAKQFNGILRRRLARAKAARDLRV-SRNRKPYLHESRHLHALRRARGTGGRF 173
                 79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-33115176IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.594116176IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-28118173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-21119141IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-21150173IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MITGGRGHGG GAGPATAAAP LWAAAAARQW CAKFPPSLGD SDPLQDLKYH EPSTAAIAAY  60
PELHKYHGPF DLAPGQSMVW SNNASAGDQG QSYGLYSPYG SQAMHGRVLL PPAIAADEPV  120
YVNAKQFNGI LRRRLARAKA ARDLRVSRNR KPYLHESRHL HALRRARGTG GRFLNTKSLA  180
NTSMGGGSEP TEGSASKATR LNPVQDRQDV FLSSLMNMAG DGEGKAKWVS ATPRGCCDLL  240
KV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A4e-18117175261HAPB protein
4g92_A4e-18117175261HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310GGRGHGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9682176e-81EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
GenBankEU9750236e-81EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955490.11e-110nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_004955491.11e-110nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLA0A1E5V8Z71e-178A0A1E5V8Z7_9POAL; Uncharacterized protein
STRINGSi032469m1e-107(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146632123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.34e-25nuclear factor Y, subunit A10