PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022696.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ERF
Protein Properties Length: 538aa    MW: 59325.1 Da    PI: 8.1987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022696.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77.1e-19119168255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f t+e+Aa+a++a ++k++g
  Do022696.1 119 PYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFKTPEDAARAYDAEARKIRG 168
                 59*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.762119176IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-21119176IPR016177DNA-binding domain
SMARTSM003801.0E-37119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-31120177IPR001471AP2/ERF domain
PRINTSPR003671.9E-10120131IPR001471AP2/ERF domain
CDDcd000182.17E-31120177No hitNo description
PfamPF008475.3E-11120168IPR001471AP2/ERF domain
PRINTSPR003671.9E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MCNGFIISDL NIKPPAARIT NKRVVEMGQE RIQEKKIKNY GECRVKRMWK IDEDDEDYEA  60
DFQAYLKKSN EEDNLVYISM STKDKVGLNF LNKDDVIIRK PTPTDEGPIV KPKKKRKNPY  120
RGIRRRPWGK WAAEIRDPRK GVRVWLGTFK TPEDAARAYD AEARKIRGNK AKVNFPNGAP  180
PNMMSNILKP PITTMPTMLV PTEKFNTNAL VCHTNNSNED LFSVVNSSGN NASSIPIEGF  240
GLFSTERPHS PYEIPRMGES PSLNKFLVGS SRNILLNFSG NNASSITPEG FGLLSMKMPY  300
DPSKIPMMGE SPSQNKFSFG SSSNKLLNFS GNNAGSINTD GFGLLSVKMP HAPYEIPRMD  360
QCPSQNRFSV GSSSNGLVNF SGNNASSIRN EGFGLVSINM PHVPFDIRRM GHCSSQNRFS  420
VGSSSNGLDN EASKNLNASS FLPHVGMQMF SQPTFGGPSA MIESNIGAIV PTLSNATPSV  480
PLDVADVDAA AKIDEQPTLQ VMENESIPSI VLQGDVSEDV AAHINMWEFY DHLIANEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21120176360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112126KKKRKNPYRGIRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974759.10.0uncharacterized protein LOC101761413
TrEMBLA0A1E5VUF40.0A0A1E5VUF4_9POAL; Uncharacterized protein
STRINGPavir.Fa00811.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.19e-26ethylene-responsive element binding protein