PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022798.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 1122aa    MW: 122304 Da    PI: 8.7859
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022798.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.89.3e-154385687124
         NAM   7 FhPtdeelvveyLkkkvegkklelee.v.ikevdiykvePwdLpk........kvkaeek.ewyfFskrdkkyatgkrknratk..sgyWkatgkdkev 92 
                 + P d+el+  +L+ k++g+ l+ +  + ++++diy ++P +L          k +++ + +w+fF++ + k+++++rk+r++   +g+W+     ++v
  Do022798.1 438 YTPADDELL-AFLRWKLAGEALPGAAgAhFHDADIYAADPATLTVryrpapvrKGEGGGSgSWFFFTRVRPKSSSDSRKSRTVGggAGTWHWERAPRAV 535
                 78*******.9**********66533234**************8446777765333333359*******************87755789********** PP

         NAM  93 lskkgelvglkktLvfykg.rapkgektdWvmh 124
                 l+ +g+ vg  +   f +   ++ +e+tdW m+
  Do022798.1 536 LNGEGSCVGHSQYSSFKRRtGKNCSERTDWYME 568
                 **999***********9652566679******5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.104.0E-93681IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS501819.2863975IPR001810F-box domain
SuperFamilySSF813839.16E-113982IPR001810F-box domain
PfamPF006463.4E-84282IPR001810F-box domain
SMARTSM002561.6E-44585IPR001810F-box domain
Gene3DG3DSA:3.80.10.104.0E-9132213IPR032675Leucine-rich repeat domain, L domain-like
PfamPF083871.8E-10343382IPR006566FBD domain
PROSITE profilePS5100520.335432595IPR003441NAC domain
SuperFamilySSF1019415.89E-18437595IPR003441NAC domain
SuperFamilySSF813837.33E-10805862IPR001810F-box domain
PROSITE profilePS5018110.133806859IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.1E-7806848IPR032675Leucine-rich repeat domain, L domain-like
PfamPF006461.4E-7808848IPR001810F-box domain
SMARTSM002560.0038812852IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.1E-7920994IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MDETLAAVLS YLPPPAILSS SSLSSSFPAA SPDGEEEEED RIGRLPDAIL RNIVSRLPTK  60
DAARTAVLSS RWRHLWTSIP LVLDDDAGGL APAAAAAALA SHPGPVLSAR LASSQDPEAV  120
ATVFASLVPR GVEDLLVVVN GSWPVEWRVP SDVLGCAALS RLWIGLCQFP DTSGVSPALL  180
SLQELGIVHS SVQDRDLHAV IPRCPVLETL AFALTQDYPR YVHIWSESLR CVVIWKSMLR  240
EVHLDDAPNV DRLLVEPIAD AATHIKIIKA PKLKILGYFD VGLHQLKIGN TVIKVDTKVK  300
PSAMVRTLRT LALKLQFGVD DQSVPSEAPV NVDIEFWDQV GFTECVYSHL KKLVLEAVRG  360
EDSELAFAKF VMERAQMLED MRVFVDGSCS RDVVLSRLSS EGPCPNPPPH ISALTPTHTT  420
TMSPPAAETP QPDDPASYTP ADDELLAFLR WKLAGEALPG AAGAHFHDAD IYAADPATLT  480
VRYRPAPVRK GEGGGSGSWF FFTRVRPKSS SDSRKSRTVG GGAGTWHWER APRAVLNGEG  540
SCVGHSQYSS FKRRTGKNCS ERTDWYMEFS EAQEGDRERV HGGEPALVLC NIYKKHSSSR  600
SSSSSRSTRK RKPTEEHAGQ SSATVKAKRR LFKLFESPAP TPAAASQEYV SSIVSIVTSG  660
LYSRVDAAKS VPEASHGMTG GSLDQDQASD GKIGGTLDHY PTFCSELSHC RATVTHPSGR  720
AERPNPPPAR QLRSPLSRSA TRKPSFPLLA GRARPPPPLW AMAMSSLAAR EMEMIMRVVL  780
TCLPGPPFPT TGGARPSPSA LRGGGEDRIS RLPDAVLRDI VARLPAKDAA RTAALSRRWR  840
RVWASASLVL DDSELLVALP GDGGGPPRYD WVGVTDTVSR IIGSHRGPIR CVRLTCCSMA  900
LAARFGALDY WLHRLAEGGA EDLVLVNRPL PNFLYLPADI LRIASLRTLY LAFWAFPDTP  960
GLPCSPAVFP RLQEIGSTAR SLQCLVLWKS LMNELAVVVA RRLQRLILWQ EYAFTSDSIV  1020
RTRVRIGYAT KLKVLGYLQP GVHQLEIGGT IIESGTKMIP STMVPSVKIL TLKVPFGIRK  1080
EAKALPAFLR CFPNVETLHV MVRFHSPSIL IQQFQHLWQG SC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022798.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814208.10.0F-box/FBD/LRR-repeat protein At1g13570-like
RefseqXP_025814209.10.0F-box/FBD/LRR-repeat protein At1g13570-like
TrEMBLA0A2S3HUP30.0A0A2S3HUP3_9POAL; Uncharacterized protein
STRINGSb03g026850.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612