PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do022966.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARR-B
Protein Properties Length: 319aa    MW: 36369.2 Da    PI: 6.672
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do022966.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like70.82e-22134184152
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                 k rl Wt +LH++F+ av++L G++kA+Pk+ile+mkv  Lt+e+v+SHLQ+
  Do022966.1 134 KSRLIWTVQLHRQFIAAVHSL-GADKAVPKKILEIMKVRHLTREQVASHLQR 184
                 68*******************.9****************************6 PP
2Response_reg44.21e-1587541109
                   HHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  41 ekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                   ++++Dli++D+  p+ dGl +l+e +++  ++p ++++++g+ +++ +++  Ga+dfl Kp+ +eel +
    Do022966.1   8 QQTVDLIICDVFFPTEDGLLILQEVTSKF-DIPTVIMSSNGDTSTVMKYITNGASDFLIKPVRIEELKN 75 
                   678**********************9999.9***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011023.537181IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-12775IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.18E-14781No hitNo description
Gene3DG3DSA:3.40.50.23007.7E-208105No hitNo description
SuperFamilySSF521721.85E-17896IPR011006CheY-like superfamily
PROSITE profilePS5129410.284129190IPR017930Myb domain
SuperFamilySSF466898.24E-15132184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-22133184IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-21134184IPR006447Myb domain, plants
PfamPF002492.1E-5139183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSFIYGNQQT VDLIICDVFF PTEDGLLILQ EVTSKFDIPT VIMSSNGDTS TVMKYITNGA  60
SDFLIKPVRI EELKNIWQHV FRKKIGMEHR KCNNAEHVDQ LSHRATGITE ATAMLEHEVR  120
ENNGTVTDIR DLRKSRLIWT VQLHRQFIAA VHSLGADKAV PKKILEIMKV RHLTREQVAS  180
HLQRSMHAYH LASVCCIILL FAYILSQKTL SQPMQKYRLH IRNSTQTLHK DDAPSSSSHS  240
NGSSIHRTQV NSSSNSLYFD QDGCMEITDY SLPKDDLSIG SECILGERNN YSPECFQDFG  300
WDADKQGSET TFLWNFEAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-14133184455ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo022966.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797974.11e-173two-component response regulator EHD1-like isoform X1
SwissprotQ7Y0W31e-110EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A1E5VS750.0A0A1E5VS75_9POAL; Two-component response regulator EHD1
STRINGSi039992m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112222741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-45response regulator 2